PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502128.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 508aa    MW: 57110.4 Da    PI: 9.459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07741136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     + rW t+E+++l  av ++G+ +W+ +a+++   Rt
   XP_016502128.1  7 KRRWGTWEELILGGAVLRHGTQDWNVVASELR-SRT 41
                     579****************************9.998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-4741IPR009057Homeodomain-like
SMARTSM002971.5E-13272376IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-15275396IPR001487Bromodomain
SuperFamilySSF473707.72E-17279375IPR001487Bromodomain
PfamPF004394.5E-10281360IPR001487Bromodomain
PROSITE profilePS5001410.746287357IPR001487Bromodomain
CDDcd043694.61E-13294371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVVGSGKRRW GTWEELILGG AVLRHGTQDW NVVASELRSR TICPYYFTPE EEFDQNFNSP  60
PCGQRVNLLA CKVKYEDLQK RYSGCNAWFE ELRKRRVEEL KRELQKSECS IGSLLTKIES  120
LKAERERSAQ IDYGSCHTES PAAVVKSEYM ESFGNDGVSA GSFTLDTRTK FSPEFESPAI  180
ASTKEIDRKL EWSESCEPAE TANGNGGVLR KRRSKRKRKD AVLDSKEVSV GESDNVCSIS  240
DISTSHCKET STSCDQSIKP TTTDDSKGGL SRLRDDDDLM AIFNSITQTE VAMIFRHRHD  300
SQKRARYKNI IRQHVDIETV RLRIANGSIK SAGELFRDLL LLTTNAIVYY SKRTREYKSA  360
MTLRDIVTKA YRDHYKFSYH KATSALLTFS TIGNLPVKPR SARPRPSKDK LQAKSCDNVN  420
SIAGTVGRDD HKPSDADSEV PLQSLLAATK GFKRRGKFNC GSVDGSVNRI TKVAEKKDTG  480
AKTKIEDHHS EMVTKERKRA CKGDLQVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217RRSKRKR
2211219RRSKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502128.10.0PREDICTED: bromodomain-containing protein 8-like isoform X1
TrEMBLM1C1L50.0M1C1L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-18DNA-binding bromodomain-containing protein